# glm: Call: glm(formula = y ~ x, family = binomial, data = data) Deviance Residuals: Min 1Q Median 3Q Max -2.1760 -0.6544 -0.3063 0.7146 2.1079 Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -30.0715 5.7563 -5.224 1.75e-07 *** x 2.9673 0.5697 5.208 1.90e-07 *** --- Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 137.186 on 99 degrees of freedom Residual deviance: 92.719 on 98 degrees of freedom AIC: 96.719 Number of Fisher Scoring iterations: 5 # glm-quasi: Call: glm(formula = y ~ x, family = quasibinomial, data = data) Deviance Residuals: Min 1Q Median 3Q Max -2.1760 -0.6544 -0.3063 0.7146 2.1079 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) -30.0715 5.6353 -5.336 6.12e-07 *** x 2.9673 0.5577 5.320 6.56e-07 *** --- Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 (Dispersion parameter for quasibinomial family taken to be 0.9584242) Null deviance: 137.186 on 99 degrees of freedom Residual deviance: 92.719 on 98 degrees of freedom AIC: NA Number of Fisher Scoring iterations: 5 # glmmPQL: Linear mixed-effects model fit by maximum likelihood Data: data AIC BIC logLik 663.8606 674.2812 -327.9303 Random effects: Formula: ~1 | id (Intercept) Residual StdDev: 6.426077 1.099915e-57 Variance function: Structure: fixed weights Formula: ~invwt Fixed effects: y ~ x Value Std.Error DF t-value p-value (Intercept) -88.78542 11.150328 98 -7.962584 0 x 8.77422 1.113142 98 7.882390 0 Correlation: (Intr) x -0.998 Standardized Within-Group Residuals: Min Q1 Med Q3 Max -4.416298e+41 -1.194443e+41 0.000000e+00 1.258129e+41 3.978170e+41 Number of Observations: 100 Number of Groups: 100 # glmmML: Call: glmmML(formula = y ~ x, data = data, cluster = id, family = binomial) coef se(coef) z Pr(>|z|) (Intercept) -68.969 146.76 -0.4699 0.638 x 6.801 14.47 0.4701 0.638 Standard deviation in mixing distribution: 3.447 Std. Error: 9.31 Residual deviance: 92.49 on 97 degrees of freedom AIC: 98.49 # MCMClogit: Iterations = 1:10000 Thinning interval = 1 Number of chains = 1 Sample size per chain = 10000 1. Empirical mean and standard deviation for each variable, plus standard error of the mean: Mean SD Naive SE Time-series SE (Intercept) -31.214 5.9184 0.059184 0.10766 x 3.081 0.5848 0.005848 0.01064 2. Quantiles for each variable: 2.5% 25% 50% 75% 97.5% (Intercept) -43.87 -35.031 -30.842 -27.041 -20.642 x 2.02 2.674 3.047 3.454 4.328